BLASTP – Useful when you have a protein sequence or you just want to explore.
BLASTX – Useful when searching using nucleotide sequences. Perhaps you just received your personal whole genome sequence (WGS) and want to see what your sequence entails. Or maybe you have a newly sequenced organism and you want to see if anyone else has uploaded the sequence.
CATH – 151 million protein domains classified into 5,481 superfamilies
Dali Domain Dictionary – A fully automatic evolutionary classification of protein folds
PDB – The Protein Data Bank
SCOP – The Structural Classification of Proteins database aims to provide a detailed and comprehensive description of the structural and evolutionary relationships between proteins whose three-dimensional structure is known and deposited in the Protein Data Bank.
The Gene Curation Coalition – Genes with classifications based on your filters
#Database #DaliDomain #TheGeneCC #TheProteinDataBank #CAIH #BLASTX #BLASTP